Pervasiveness of HLA allele-specific expression loss across tumor types.

AUTHORS: Ioan Philip, Anqi Wang, Oleksandr Kravets, Rose Orenbuch, Junfei Zhao, Tomin E. Perea- Chamblee, Gulam A. Manji, Evangelina López de Maturana, Nuria Malats, Kenneth P. Olive, Raul Rabadan.

*These authors have contributed equally to this work. +Corresponding authors.

Genome Medicine. 2023 January 9. doi.org/10.1186/s13073-023-01154-x

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Disentangling interpretable factors with supervised independent subspace principal component analysis

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Smoother: a unified and modular framework for incorporating structural dependency in spatial omics data.